Image processing and analysis methods for the Adolescent Brain Cognitive Development Study

Donald J. Hagler; Sean N. Hatton; M. Daniela Cornejo; Carolina Makowski; Damien A. Fair; Anthony Steven Dick; Matthew T. Sutherland; B. J. Casey; Deanna M. Barch; Michael P. Harms; Richard Watts; James M. Bjork; Hugh P. Garavan; Laura Hilmer; Christopher J. Pung; Chelsea S. Sicat; Joshua Kuperman; Hauke Bartsch; Feng Xue; Mary M. Heitzeg; Angela R. Laird; Thanh T. Trinh; Raul Gonzalez; Susan F. Tapert; Michael C. Riedel; Lindsay M. Squeglia; Luke W. Hyde; Monica D. Rosenberg; Eric A. Earl; Katia D. Howlett; Fiona C. Baker; Mary Soules; Jazmin Diaz; Octavio Ruiz de Leon; Wesley K. Thompson; Michael C. Neale; Megan Herting; Elizabeth R. Sowell; Ruben P. Alvarez; Samuel W. Hawes; Mariana Sanchez; Jerzy Bodurka; Florence J. Breslin; Amanda Sheffield Morris; Martin P. Paulus; W. Kyle Simmons; Jonathan R. Polimeni; Andre van der Kouwe; Andrew S. Nencka; Kevin M. Gray; Carlo Pierpaoli; John A. Matochik; Antonio Noronha; Will M. Aklin; Kevin Conway; Meyer Glantz; Elizabeth Hoffman; Roger Little; Marsha Lopez; Vani Pariyadath; Susan RB Weiss; Dana L. Wolff-Hughes; Rebecca DelCarmen-Wiggins; Sarah W. Feldstein Ewing; Oscar Miranda-Dominguez; Bonnie J. Nagel; Anders J. Perrone; Darrick T. Sturgeon; Aimee Goldstone; Adolf Pfefferbaum; Kilian M. Pohl; Devin Prouty; Kristina Uban; Susan Y. Bookheimer; Mirella Dapretto; Adriana Galvan; Kara Bagot; Jay Giedd; M. Alejandra Infante; Joanna Jacobus; Kevin Patrick; Paul D. Shilling; Rahul Desikan; Yi Li; Leo Sugrue; Marie T. Banich; Naomi Friedman; John K. Hewitt; Christian Hopfer; Joseph Sakai; Jody Tanabe; Linda B. Cottler; Sara Jo Nixon; Linda Chang; Christine Cloak; Thomas Ernst; Gloria Reeves; David N. Kennedy; Steve Heeringa; Scott Peltier; John Schulenberg; Chandra Sripada; Robert A. Zucker; William G. Iacono; Monica Luciana; Finnegan J. Calabro; Duncan B. Clark; David A. Lewis; Beatriz Luna; Claudiu Schirda; Tufikameni Brima; John J. Foxe; Edward G. Freedman; Daniel W. Mruzek; Michael J. Mason; Rebekah Huber; Erin McGlade; Andrew Prescot; Perry F. Renshaw; Deborah A. Yurgelun-Todd; Nicholas A. Allgaier; Julie A. Dumas; Masha Ivanova; Alexandra Potter; Paul Florsheim; Christine Larson; Krista Lisdahl; Michael E. Charness; Bernard Fuemmeler; John M. Hettema; Hermine H. Maes; Joel Steinberg; Andrey P. Anokhin; Paul Glaser; Andrew C. Heath; Pamela A. Madden; Arielle Baskin-Sommers; R. Todd Constable; Steven J. Grant; Gayathri J. Dowling; Sandra A. Brown; Terry L. Jernigan; Anders M. Dale

doi:10.1016/j.neuroimage.2019.116091

Image processing and analysis methods for the Adolescent Brain Cognitive Development Study

Donald J. Hagler, Sean N. Hatton, M. Daniela Cornejo, Carolina Makowski, Damien A. Fair, Anthony Steven Dick, Matthew T. Sutherland, B. J. Casey, Deanna M. Barch, Michael P. Harms, Richard Watts, James M. Bjork, Hugh P. Garavan, Laura Hilmer, Christopher J. Pung, Chelsea S. Sicat, Joshua Kuperman, Hauke Bartsch, Feng Xue, Mary M. HeitzegAngela R. Laird, Thanh T. Trinh, Raul Gonzalez, Susan F. Tapert, Michael C. Riedel, Lindsay M. Squeglia, Luke W. Hyde, Monica D. Rosenberg, Eric A. Earl, Katia D. Howlett, Fiona C. Baker, Mary Soules, Jazmin Diaz, Octavio Ruiz de Leon, Wesley K. Thompson, Michael C. Neale, Megan Herting, Elizabeth R. Sowell, Ruben P. Alvarez, Samuel W. Hawes, Mariana Sanchez, Jerzy Bodurka, Florence J. Breslin, Amanda Sheffield Morris, Martin P. Paulus, W. Kyle Simmons, Jonathan R. Polimeni, Andre van der Kouwe, Andrew S. Nencka, Kevin M. Gray, Carlo Pierpaoli, John A. Matochik, Antonio Noronha, Will M. Aklin, Kevin Conway, Meyer Glantz, Elizabeth Hoffman, Roger Little, Marsha Lopez, Vani Pariyadath, Susan RB Weiss, Dana L. Wolff-Hughes, Rebecca DelCarmen-Wiggins, Sarah W. Feldstein Ewing, Oscar Miranda-Dominguez, Bonnie J. Nagel, Anders J. Perrone, Darrick T. Sturgeon, Aimee Goldstone, Adolf Pfefferbaum, Kilian M. Pohl, Devin Prouty, Kristina Uban, Susan Y. Bookheimer, Mirella Dapretto, Adriana Galvan, Kara Bagot, Jay Giedd, M. Alejandra Infante, Joanna Jacobus, Kevin Patrick, Paul D. Shilling, Rahul Desikan, Yi Li, Leo Sugrue, Marie T. Banich, Naomi Friedman, John K. Hewitt, Christian Hopfer, Joseph Sakai, Jody Tanabe, Linda B. Cottler, Sara Jo Nixon, Linda Chang, Christine Cloak, Thomas Ernst, Gloria Reeves, David N. Kennedy, Steve Heeringa, Scott Peltier, John Schulenberg, Chandra Sripada, Robert A. Zucker, William G. Iacono, Monica Luciana, Finnegan J. Calabro, Duncan B. Clark, David A. Lewis, Beatriz Luna, Claudiu Schirda, Tufikameni Brima, John J. Foxe, Edward G. Freedman, Daniel W. Mruzek, Michael J. Mason, Rebekah Huber, Erin McGlade, Andrew Prescot, Perry F. Renshaw, Deborah A. Yurgelun-Todd, Nicholas A. Allgaier, Julie A. Dumas, Masha Ivanova, Alexandra Potter, Paul Florsheim, Christine Larson, Krista Lisdahl, Michael E. Charness, Bernard Fuemmeler, John M. Hettema, Hermine H. Maes, Joel Steinberg, Andrey P. Anokhin, Paul Glaser, Andrew C. Heath, Pamela A. Madden, Arielle Baskin-Sommers, R. Todd Constable, Steven J. Grant, Gayathri J. Dowling, Sandra A. Brown, Terry L. Jernigan, Anders M. Dale

Research output: Contribution to journal › Article › peer-review

472 Scopus citations

Abstract

The Adolescent Brain Cognitive Development (ABCD) Study is an ongoing, nationwide study of the effects of environmental influences on behavioral and brain development in adolescents. The main objective of the study is to recruit and assess over eleven thousand 9-10-year-olds and follow them over the course of 10 years to characterize normative brain and cognitive development, the many factors that influence brain development, and the effects of those factors on mental health and other outcomes. The study employs state-of-the-art multimodal brain imaging, cognitive and clinical assessments, bioassays, and careful assessment of substance use, environment, psychopathological symptoms, and social functioning. The data is a resource of unprecedented scale and depth for studying typical and atypical development. The aim of this manuscript is to describe the baseline neuroimaging processing and subject-level analysis methods used by ABCD. Processing and analyses include modality-specific corrections for distortions and motion, brain segmentation and cortical surface reconstruction derived from structural magnetic resonance imaging (sMRI), analysis of brain microstructure using diffusion MRI (dMRI), task-related analysis of functional MRI (fMRI), and functional connectivity analysis of resting-state fMRI. This manuscript serves as a methodological reference for users of publicly shared neuroimaging data from the ABCD Study.

Original language	English
Article number	116091
Journal	NeuroImage
Volume	202
DOIs	https://doi.org/10.1016/j.neuroimage.2019.116091
State	Published - 15 Nov 2019

Keywords

ABCD
Adolescent
Data sharing
Magnetic resonance imaging
Processing pipeline

Access to Document

10.1016/j.neuroimage.2019.116091

Cite this

Hagler, D. J., Hatton, S. N., Cornejo, M. D., Makowski, C., Fair, D. A., Dick, A. S., Sutherland, M. T., Casey, B. J., Barch, D. M., Harms, M. P., Watts, R., Bjork, J. M., Garavan, H. P., Hilmer, L., Pung, C. J., Sicat, C. S., Kuperman, J., Bartsch, H., Xue, F., ... Dale, A. M. (2019). Image processing and analysis methods for the Adolescent Brain Cognitive Development Study. NeuroImage, 202, Article 116091. https://doi.org/10.1016/j.neuroimage.2019.116091

@article{b50960abeae14c8fb7be4718927b0ebb,

title = "Image processing and analysis methods for the Adolescent Brain Cognitive Development Study",

abstract = "The Adolescent Brain Cognitive Development (ABCD) Study is an ongoing, nationwide study of the effects of environmental influences on behavioral and brain development in adolescents. The main objective of the study is to recruit and assess over eleven thousand 9-10-year-olds and follow them over the course of 10 years to characterize normative brain and cognitive development, the many factors that influence brain development, and the effects of those factors on mental health and other outcomes. The study employs state-of-the-art multimodal brain imaging, cognitive and clinical assessments, bioassays, and careful assessment of substance use, environment, psychopathological symptoms, and social functioning. The data is a resource of unprecedented scale and depth for studying typical and atypical development. The aim of this manuscript is to describe the baseline neuroimaging processing and subject-level analysis methods used by ABCD. Processing and analyses include modality-specific corrections for distortions and motion, brain segmentation and cortical surface reconstruction derived from structural magnetic resonance imaging (sMRI), analysis of brain microstructure using diffusion MRI (dMRI), task-related analysis of functional MRI (fMRI), and functional connectivity analysis of resting-state fMRI. This manuscript serves as a methodological reference for users of publicly shared neuroimaging data from the ABCD Study.",

keywords = "ABCD, Adolescent, Data sharing, Magnetic resonance imaging, Processing pipeline",

author = "Hagler, {Donald J.} and Hatton, {Sean N.} and Cornejo, {M. Daniela} and Carolina Makowski and Fair, {Damien A.} and Dick, {Anthony Steven} and Sutherland, {Matthew T.} and Casey, {B. J.} and Barch, {Deanna M.} and Harms, {Michael P.} and Richard Watts and Bjork, {James M.} and Garavan, {Hugh P.} and Laura Hilmer and Pung, {Christopher J.} and Sicat, {Chelsea S.} and Joshua Kuperman and Hauke Bartsch and Feng Xue and Heitzeg, {Mary M.} and Laird, {Angela R.} and Trinh, {Thanh T.} and Raul Gonzalez and Tapert, {Susan F.} and Riedel, {Michael C.} and Squeglia, {Lindsay M.} and Hyde, {Luke W.} and Rosenberg, {Monica D.} and Earl, {Eric A.} and Howlett, {Katia D.} and Baker, {Fiona C.} and Mary Soules and Jazmin Diaz and {de Leon}, {Octavio Ruiz} and Thompson, {Wesley K.} and Neale, {Michael C.} and Megan Herting and Sowell, {Elizabeth R.} and Alvarez, {Ruben P.} and Hawes, {Samuel W.} and Mariana Sanchez and Jerzy Bodurka and Breslin, {Florence J.} and Morris, {Amanda Sheffield} and Paulus, {Martin P.} and Simmons, {W. Kyle} and Polimeni, {Jonathan R.} and {van der Kouwe}, Andre and Nencka, {Andrew S.} and Gray, {Kevin M.} and Carlo Pierpaoli and Matochik, {John A.} and Antonio Noronha and Aklin, {Will M.} and Kevin Conway and Meyer Glantz and Elizabeth Hoffman and Roger Little and Marsha Lopez and Vani Pariyadath and Weiss, {Susan RB} and Wolff-Hughes, {Dana L.} and Rebecca DelCarmen-Wiggins and {Feldstein Ewing}, {Sarah W.} and Oscar Miranda-Dominguez and Nagel, {Bonnie J.} and Perrone, {Anders J.} and Sturgeon, {Darrick T.} and Aimee Goldstone and Adolf Pfefferbaum and Pohl, {Kilian M.} and Devin Prouty and Kristina Uban and Bookheimer, {Susan Y.} and Mirella Dapretto and Adriana Galvan and Kara Bagot and Jay Giedd and Infante, {M. Alejandra} and Joanna Jacobus and Kevin Patrick and Shilling, {Paul D.} and Rahul Desikan and Yi Li and Leo Sugrue and Banich, {Marie T.} and Naomi Friedman and Hewitt, {John K.} and Christian Hopfer and Joseph Sakai and Jody Tanabe and Cottler, {Linda B.} and Nixon, {Sara Jo} and Linda Chang and Christine Cloak and Thomas Ernst and Gloria Reeves and Kennedy, {David N.} and Steve Heeringa and Scott Peltier and John Schulenberg and Chandra Sripada and Zucker, {Robert A.} and Iacono, {William G.} and Monica Luciana and Calabro, {Finnegan J.} and Clark, {Duncan B.} and Lewis, {David A.} and Beatriz Luna and Claudiu Schirda and Tufikameni Brima and Foxe, {John J.} and Freedman, {Edward G.} and Mruzek, {Daniel W.} and Mason, {Michael J.} and Rebekah Huber and Erin McGlade and Andrew Prescot and Renshaw, {Perry F.} and Yurgelun-Todd, {Deborah A.} and Allgaier, {Nicholas A.} and Dumas, {Julie A.} and Masha Ivanova and Alexandra Potter and Paul Florsheim and Christine Larson and Krista Lisdahl and Charness, {Michael E.} and Bernard Fuemmeler and Hettema, {John M.} and Maes, {Hermine H.} and Joel Steinberg and Anokhin, {Andrey P.} and Paul Glaser and Heath, {Andrew C.} and Madden, {Pamela A.} and Arielle Baskin-Sommers and Constable, {R. Todd} and Grant, {Steven J.} and Dowling, {Gayathri J.} and Brown, {Sandra A.} and Jernigan, {Terry L.} and Dale, {Anders M.}",

note = "Funding Information: Anders M. Dale reports that he is a Founder of and holds equity in CorTechs Labs, Inc., and serves on its Scientific Advisory Board. He is a member of the Scientific Advisory Board of Human Longevity, Inc., and receives funding through research grants with General Electric Healthcare. The terms of these arrangements have been reviewed by and approved by the University of California, San Diego in accordance with its conflict of interest policies.Data used in the preparation of this article were obtained from the Adolescent Brain Cognitive Development (ABCD) Study (https://abcdstudy.org), held in the NIMH Data Archive (NDA). This is a multisite, longitudinal study designed to recruit more than 10,000 children aged 9?10 years and follow them over 10 years into early adulthood. The ABCD Study is supported by the National Institutes of Health and additional federal partners under award numbers U01DA041022, U01DA041028, U01DA041048, U01DA041089, U01DA041106, U01DA041117, U01DA041120, U01DA041134, U01DA041148, U01DA041156, U01DA041174, U24DA041025, U01DA041093, U24DA041123, and U24DA041147. A full list of supporters is available at https://abcdstudy.org/nih-collaborators. A listing of participating sites and a complete listing of the study investigators can be found at https://abcdstudy.org/principal-investigators.html. ABCD consortium investigators designed and implemented the study and/or provided data but did not necessarily participate in analysis or writing of this report. This manuscript reflects the views of the authors and may not reflect the opinions or views of the NIH or ABCD consortium investigators. The ABCD data repository grows and changes over time. The ABCD data used in this report came from the ABCD Data Release 2.0 (DOI: 10.15154/1503209, March 2019) and ABCD Fix Release 2.0.1 (DOI: 10.15154/1504041, July 2019). Dr. Gayathri Dowling was substantially involved in all of the cited grants, Drs. Marsha Lopez and John Matochik were substantially involved in U24DA041147, and Drs. Steven Grant and Antonio Noronha were substantially involved in U24DA041123, consistent with their roles as Scientific Officers. All other Federal representatives contributed to the interpretation of the data and participated in the preparation, review and approval of the manuscript, consistent with their roles on the ABCD Federal Partners Group. The views and opinions expressed in this manuscript are those of the authors only and do not necessarily represent the views, official policy or position of the U.S. Department of Health and Human Services or any of its affiliated institutions or agencies. Funding Information: Data used in the preparation of this article were obtained from the Adolescent Brain Cognitive Development (ABCD) Study ( https://abcdstudy.org ), held in the NIMH Data Archive (NDA). This is a multisite, longitudinal study designed to recruit more than 10,000 children aged 9–10 years and follow them over 10 years into early adulthood. The ABCD Study is supported by the National Institutes of Health and additional federal partners under award numbers U01DA041022 , U01DA041028 , U01DA041048 , U01DA041089 , U01DA041106 , U01DA041117 , U01DA041120 , U01DA041134 , U01DA041148 , U01DA041156 , U01DA041174 , U24DA041025 , U01DA041093 , U24DA041123 , and U24DA041147 . A full list of supporters is available at https://abcdstudy.org/nih-collaborators . A listing of participating sites and a complete listing of the study investigators can be found at https://abcdstudy.org/principal-investigators.html . ABCD consortium investigators designed and implemented the study and/or provided data but did not necessarily participate in analysis or writing of this report. This manuscript reflects the views of the authors and may not reflect the opinions or views of the NIH or ABCD consortium investigators. The ABCD data repository grows and changes over time. The ABCD data used in this report came from the ABCD Data Release 2.0 (DOI: 10.15154/1503209, March 2019) and ABCD Fix Release 2.0.1 (DOI: 10.15154/1504041, July 2019). Publisher Copyright: {\textcopyright} 2019 Elsevier Inc.",

year = "2019",

month = nov,

day = "15",

doi = "10.1016/j.neuroimage.2019.116091",

language = "English",

volume = "202",

journal = "NeuroImage",

issn = "1053-8119",

publisher = "Academic Press Inc.",

}

Hagler, DJ, Hatton, SN, Cornejo, MD, Makowski, C, Fair, DA, Dick, AS, Sutherland, MT, Casey, BJ, Barch, DM, Harms, MP, Watts, R, Bjork, JM, Garavan, HP, Hilmer, L, Pung, CJ, Sicat, CS, Kuperman, J, Bartsch, H, Xue, F, Heitzeg, MM, Laird, AR, Trinh, TT, Gonzalez, R, Tapert, SF, Riedel, MC, Squeglia, LM, Hyde, LW, Rosenberg, MD, Earl, EA, Howlett, KD, Baker, FC, Soules, M, Diaz, J, de Leon, OR, Thompson, WK, Neale, MC, Herting, M, Sowell, ER, Alvarez, RP, Hawes, SW, Sanchez, M, Bodurka, J, Breslin, FJ , Morris, AS, Paulus, MP, Simmons, WK, Polimeni, JR, van der Kouwe, A, Nencka, AS, Gray, KM, Pierpaoli, C, Matochik, JA, Noronha, A, Aklin, WM, Conway, K, Glantz, M, Hoffman, E, Little, R, Lopez, M, Pariyadath, V, Weiss, SRB, Wolff-Hughes, DL, DelCarmen-Wiggins, R, Feldstein Ewing, SW, Miranda-Dominguez, O, Nagel, BJ, Perrone, AJ, Sturgeon, DT, Goldstone, A, Pfefferbaum, A, Pohl, KM, Prouty, D, Uban, K, Bookheimer, SY, Dapretto, M, Galvan, A, Bagot, K, Giedd, J, Infante, MA, Jacobus, J, Patrick, K, Shilling, PD, Desikan, R, Li, Y, Sugrue, L, Banich, MT, Friedman, N, Hewitt, JK, Hopfer, C, Sakai, J, Tanabe, J, Cottler, LB, Nixon, SJ, Chang, L, Cloak, C, Ernst, T, Reeves, G, Kennedy, DN, Heeringa, S, Peltier, S, Schulenberg, J, Sripada, C, Zucker, RA, Iacono, WG, Luciana, M, Calabro, FJ, Clark, DB, Lewis, DA, Luna, B, Schirda, C, Brima, T, Foxe, JJ, Freedman, EG, Mruzek, DW, Mason, MJ, Huber, R, McGlade, E, Prescot, A, Renshaw, PF, Yurgelun-Todd, DA, Allgaier, NA, Dumas, JA, Ivanova, M, Potter, A, Florsheim, P, Larson, C, Lisdahl, K, Charness, ME, Fuemmeler, B, Hettema, JM, Maes, HH, Steinberg, J, Anokhin, AP, Glaser, P, Heath, AC, Madden, PA, Baskin-Sommers, A, Constable, RT, Grant, SJ, Dowling, GJ, Brown, SA, Jernigan, TL & Dale, AM 2019, 'Image processing and analysis methods for the Adolescent Brain Cognitive Development Study', NeuroImage, vol. 202, 116091. https://doi.org/10.1016/j.neuroimage.2019.116091

TY - JOUR

T1 - Image processing and analysis methods for the Adolescent Brain Cognitive Development Study

AU - Hagler, Donald J.

AU - Hatton, Sean N.

AU - Cornejo, M. Daniela

AU - Makowski, Carolina

AU - Fair, Damien A.

AU - Dick, Anthony Steven

AU - Sutherland, Matthew T.

AU - Casey, B. J.

AU - Barch, Deanna M.

AU - Harms, Michael P.

AU - Watts, Richard

AU - Bjork, James M.

AU - Garavan, Hugh P.

AU - Hilmer, Laura

AU - Pung, Christopher J.

AU - Sicat, Chelsea S.

AU - Kuperman, Joshua

AU - Bartsch, Hauke

AU - Xue, Feng

AU - Heitzeg, Mary M.

AU - Laird, Angela R.

AU - Trinh, Thanh T.

AU - Gonzalez, Raul

AU - Tapert, Susan F.

AU - Riedel, Michael C.

AU - Squeglia, Lindsay M.

AU - Hyde, Luke W.

AU - Rosenberg, Monica D.

AU - Earl, Eric A.

AU - Howlett, Katia D.

AU - Baker, Fiona C.

AU - Soules, Mary

AU - Diaz, Jazmin

AU - de Leon, Octavio Ruiz

AU - Thompson, Wesley K.

AU - Neale, Michael C.

AU - Herting, Megan

AU - Sowell, Elizabeth R.

AU - Alvarez, Ruben P.

AU - Hawes, Samuel W.

AU - Sanchez, Mariana

AU - Bodurka, Jerzy

AU - Breslin, Florence J.

AU - Morris, Amanda Sheffield

AU - Paulus, Martin P.

AU - Simmons, W. Kyle

AU - Polimeni, Jonathan R.

AU - van der Kouwe, Andre

AU - Nencka, Andrew S.

AU - Gray, Kevin M.

AU - Pierpaoli, Carlo

AU - Matochik, John A.

AU - Noronha, Antonio

AU - Aklin, Will M.

AU - Conway, Kevin

AU - Glantz, Meyer

AU - Hoffman, Elizabeth

AU - Little, Roger

AU - Lopez, Marsha

AU - Pariyadath, Vani

AU - Weiss, Susan RB

AU - Wolff-Hughes, Dana L.

AU - DelCarmen-Wiggins, Rebecca

AU - Feldstein Ewing, Sarah W.

AU - Miranda-Dominguez, Oscar

AU - Nagel, Bonnie J.

AU - Perrone, Anders J.

AU - Sturgeon, Darrick T.

AU - Goldstone, Aimee

AU - Pfefferbaum, Adolf

AU - Pohl, Kilian M.

AU - Prouty, Devin

AU - Uban, Kristina

AU - Bookheimer, Susan Y.

AU - Dapretto, Mirella

AU - Galvan, Adriana

AU - Bagot, Kara

AU - Giedd, Jay

AU - Infante, M. Alejandra

AU - Jacobus, Joanna

AU - Patrick, Kevin

AU - Shilling, Paul D.

AU - Desikan, Rahul

AU - Li, Yi

AU - Sugrue, Leo

AU - Banich, Marie T.

AU - Friedman, Naomi

AU - Hewitt, John K.

AU - Hopfer, Christian

AU - Sakai, Joseph

AU - Tanabe, Jody

AU - Cottler, Linda B.

AU - Nixon, Sara Jo

AU - Chang, Linda

AU - Cloak, Christine

AU - Ernst, Thomas

AU - Reeves, Gloria

AU - Kennedy, David N.

AU - Heeringa, Steve

AU - Peltier, Scott

AU - Schulenberg, John

AU - Sripada, Chandra

AU - Zucker, Robert A.

AU - Iacono, William G.

AU - Luciana, Monica

AU - Calabro, Finnegan J.

AU - Clark, Duncan B.

AU - Lewis, David A.

AU - Luna, Beatriz

AU - Schirda, Claudiu

AU - Brima, Tufikameni

AU - Foxe, John J.

AU - Freedman, Edward G.

AU - Mruzek, Daniel W.

AU - Mason, Michael J.

AU - Huber, Rebekah

AU - McGlade, Erin

AU - Prescot, Andrew

AU - Renshaw, Perry F.

AU - Yurgelun-Todd, Deborah A.

AU - Allgaier, Nicholas A.

AU - Dumas, Julie A.

AU - Ivanova, Masha

AU - Potter, Alexandra

AU - Florsheim, Paul

AU - Larson, Christine

AU - Lisdahl, Krista

AU - Charness, Michael E.

AU - Fuemmeler, Bernard

AU - Hettema, John M.

AU - Maes, Hermine H.

AU - Steinberg, Joel

AU - Anokhin, Andrey P.

AU - Glaser, Paul

AU - Heath, Andrew C.

AU - Madden, Pamela A.

AU - Baskin-Sommers, Arielle

AU - Constable, R. Todd

AU - Grant, Steven J.

AU - Dowling, Gayathri J.

AU - Brown, Sandra A.

AU - Jernigan, Terry L.

AU - Dale, Anders M.

N1 - Funding Information: Anders M. Dale reports that he is a Founder of and holds equity in CorTechs Labs, Inc., and serves on its Scientific Advisory Board. He is a member of the Scientific Advisory Board of Human Longevity, Inc., and receives funding through research grants with General Electric Healthcare. The terms of these arrangements have been reviewed by and approved by the University of California, San Diego in accordance with its conflict of interest policies.Data used in the preparation of this article were obtained from the Adolescent Brain Cognitive Development (ABCD) Study (https://abcdstudy.org), held in the NIMH Data Archive (NDA). This is a multisite, longitudinal study designed to recruit more than 10,000 children aged 9?10 years and follow them over 10 years into early adulthood. The ABCD Study is supported by the National Institutes of Health and additional federal partners under award numbers U01DA041022, U01DA041028, U01DA041048, U01DA041089, U01DA041106, U01DA041117, U01DA041120, U01DA041134, U01DA041148, U01DA041156, U01DA041174, U24DA041025, U01DA041093, U24DA041123, and U24DA041147. A full list of supporters is available at https://abcdstudy.org/nih-collaborators. A listing of participating sites and a complete listing of the study investigators can be found at https://abcdstudy.org/principal-investigators.html. ABCD consortium investigators designed and implemented the study and/or provided data but did not necessarily participate in analysis or writing of this report. This manuscript reflects the views of the authors and may not reflect the opinions or views of the NIH or ABCD consortium investigators. The ABCD data repository grows and changes over time. The ABCD data used in this report came from the ABCD Data Release 2.0 (DOI: 10.15154/1503209, March 2019) and ABCD Fix Release 2.0.1 (DOI: 10.15154/1504041, July 2019). Dr. Gayathri Dowling was substantially involved in all of the cited grants, Drs. Marsha Lopez and John Matochik were substantially involved in U24DA041147, and Drs. Steven Grant and Antonio Noronha were substantially involved in U24DA041123, consistent with their roles as Scientific Officers. All other Federal representatives contributed to the interpretation of the data and participated in the preparation, review and approval of the manuscript, consistent with their roles on the ABCD Federal Partners Group. The views and opinions expressed in this manuscript are those of the authors only and do not necessarily represent the views, official policy or position of the U.S. Department of Health and Human Services or any of its affiliated institutions or agencies. Funding Information: Data used in the preparation of this article were obtained from the Adolescent Brain Cognitive Development (ABCD) Study ( https://abcdstudy.org ), held in the NIMH Data Archive (NDA). This is a multisite, longitudinal study designed to recruit more than 10,000 children aged 9–10 years and follow them over 10 years into early adulthood. The ABCD Study is supported by the National Institutes of Health and additional federal partners under award numbers U01DA041022 , U01DA041028 , U01DA041048 , U01DA041089 , U01DA041106 , U01DA041117 , U01DA041120 , U01DA041134 , U01DA041148 , U01DA041156 , U01DA041174 , U24DA041025 , U01DA041093 , U24DA041123 , and U24DA041147 . A full list of supporters is available at https://abcdstudy.org/nih-collaborators . A listing of participating sites and a complete listing of the study investigators can be found at https://abcdstudy.org/principal-investigators.html . ABCD consortium investigators designed and implemented the study and/or provided data but did not necessarily participate in analysis or writing of this report. This manuscript reflects the views of the authors and may not reflect the opinions or views of the NIH or ABCD consortium investigators. The ABCD data repository grows and changes over time. The ABCD data used in this report came from the ABCD Data Release 2.0 (DOI: 10.15154/1503209, March 2019) and ABCD Fix Release 2.0.1 (DOI: 10.15154/1504041, July 2019). Publisher Copyright: © 2019 Elsevier Inc.

PY - 2019/11/15

Y1 - 2019/11/15

N2 - The Adolescent Brain Cognitive Development (ABCD) Study is an ongoing, nationwide study of the effects of environmental influences on behavioral and brain development in adolescents. The main objective of the study is to recruit and assess over eleven thousand 9-10-year-olds and follow them over the course of 10 years to characterize normative brain and cognitive development, the many factors that influence brain development, and the effects of those factors on mental health and other outcomes. The study employs state-of-the-art multimodal brain imaging, cognitive and clinical assessments, bioassays, and careful assessment of substance use, environment, psychopathological symptoms, and social functioning. The data is a resource of unprecedented scale and depth for studying typical and atypical development. The aim of this manuscript is to describe the baseline neuroimaging processing and subject-level analysis methods used by ABCD. Processing and analyses include modality-specific corrections for distortions and motion, brain segmentation and cortical surface reconstruction derived from structural magnetic resonance imaging (sMRI), analysis of brain microstructure using diffusion MRI (dMRI), task-related analysis of functional MRI (fMRI), and functional connectivity analysis of resting-state fMRI. This manuscript serves as a methodological reference for users of publicly shared neuroimaging data from the ABCD Study.

AB - The Adolescent Brain Cognitive Development (ABCD) Study is an ongoing, nationwide study of the effects of environmental influences on behavioral and brain development in adolescents. The main objective of the study is to recruit and assess over eleven thousand 9-10-year-olds and follow them over the course of 10 years to characterize normative brain and cognitive development, the many factors that influence brain development, and the effects of those factors on mental health and other outcomes. The study employs state-of-the-art multimodal brain imaging, cognitive and clinical assessments, bioassays, and careful assessment of substance use, environment, psychopathological symptoms, and social functioning. The data is a resource of unprecedented scale and depth for studying typical and atypical development. The aim of this manuscript is to describe the baseline neuroimaging processing and subject-level analysis methods used by ABCD. Processing and analyses include modality-specific corrections for distortions and motion, brain segmentation and cortical surface reconstruction derived from structural magnetic resonance imaging (sMRI), analysis of brain microstructure using diffusion MRI (dMRI), task-related analysis of functional MRI (fMRI), and functional connectivity analysis of resting-state fMRI. This manuscript serves as a methodological reference for users of publicly shared neuroimaging data from the ABCD Study.

KW - ABCD

KW - Adolescent

KW - Data sharing

KW - Magnetic resonance imaging

KW - Processing pipeline

UR - http://www.scopus.com/inward/record.url?scp=85072244119&partnerID=8YFLogxK

U2 - 10.1016/j.neuroimage.2019.116091

DO - 10.1016/j.neuroimage.2019.116091

M3 - Article

C2 - 31415884

AN - SCOPUS:85072244119

SN - 1053-8119

VL - 202

JO - NeuroImage

JF - NeuroImage

M1 - 116091

ER -

Image processing and analysis methods for the Adolescent Brain Cognitive Development Study

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